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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
21
total RNA-seq
4
WGBS
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
Assay category
24
DNA binding
22
Transcription
4
DNA methylation
1
3D chromatin structure
1
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
3
control
1
transcription factor
Date released
27
August, 2017
20
May, 2022
August, 2021
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
1
May, 2020
1
November, 2017
Available data
bam
75
fastq
43
tagAlign
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
54
Homo sapiens
Biosample type
51
tissue
3
cell line
Organ
230
pancreas
177
epithelium
89
bone element
84
heart
76
kidney
64
connective tissue
54
liver
43
adipose tissue
39
blood vessel
39
vasculature
37
artery
34
brain
26
eye
20
lung
19
musculature of body
8
blood
8
bodily fluid
8
limb
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
hg19
Lab
34
AMP-T2D consortium
20
Karen Mohlke, UNC
assay_title!
HiChIP
assembly!
hg19
files.file_type!
bam
month_released!
August, 2021
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
tissue
liver
23
20
3
1
1
right lobe of liver
1
1
1
cell line
HepG2
1
1
1
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