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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
418
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
418
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
other context
2
other post-translational modification
Date released
313
November, 2017
61
November, 2018
28
December, 2018
23
January, 2019
Available data
518
bam
462
bigWig
425
fastq
381
bed narrowPeak
353
bigBed narrowPeak
80
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
425
Homo sapiens
Biosample type
425
cell line
402
primary cell
374
tissue
137
in vitro differentiated cells
4
stem cell
Organ
365
liver
60
blood
60
bodily fluid
Project
425
AMP
Genome assembly (visualization)
365
hg19
319
GRCh38
Lab
425
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
HiChIP
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
other context
BIOSAMPLE
ASSAY
425 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
358
5
1
1
GM12878
60
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