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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
21
transcription factor
13
chromatin remodeller
13
histone
13
histone modification
9
narrow histone mark
6
RNA binding protein
4
broad histone mark
1
recombinant protein
Date released
16
August, 2017
December, 2017
10
November, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
45
bam
45
bigWig
45
fastq
43
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
tagAlign
4
bed bed3+
Organism
34
Homo sapiens
Biosample type
15
cell line
8
in vitro differentiated cells
6
tissue
5
primary cell
Organ
16
liver
9
pancreas
6
connective tissue
4
epithelium
Project
34
AMP
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
34
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
assay_title!
HiChIP
files.file_type!
tagAlign
month_released!
December, 2017
January, 2018
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
15
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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