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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
2
ATAC-seq
Assay category
22
DNA binding
2
DNA accessibility
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
Date released
13
August, 2017
6
November, 2017
4
October, 2017
1
March, 2019
Available data
3335
bam
3101
bigWig
1757
bed narrowPeak
1591
tsv
1356
fastq
995
bigBed narrowPeak
383
tagAlign
276
bed broadPeak
bigBed broadPeak
239
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
18
Homo sapiens
Biosample type
24
tissue
Organ
14
pancreas
musculature of body
9
brain
1
adipose tissue
1
connective tissue
Project
24
AMP
Genome assembly (visualization)
23
hg19
15
GRCh38
Lab
22
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
HiChIP
award.project!
KPMP
files.file_type!
bigBed broadPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
24 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
middle frontal area 46
2
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