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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
HiChIP
Assay category
105
Transcription
29
DNA accessibility
Target of assay
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
68
May, 2021
45
May, 2020
21
February, 2023
16
January, 2021
4
March, 2020
Available data
98
bam
98
bigWig
98
tsv
Organism
154
Homo sapiens
Biosample type
120
primary cell
29
tissue
5
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3364
AMP
324
HPAP
154
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
150
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
assay_title!
HiChIP
target.investigated_as!
histone
narrow histone mark
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
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