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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
208
DNase-seq
25
ATAC-seq
5
FAIRE-seq
Assay category
552
DNA binding
238
DNA accessibility
Target of assay
403
transcription factor
379
histone
379
histone modification
broad histone mark
144
narrow histone mark
91
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
267
November, 2017
202
June, 2019
73
November, 2018
39
May, 2019
33
December, 2017
30
December, 2018
30
October, 2019
27
April, 2019
26
October, 2018
23
August, 2017
17
January, 2019
14
September, 2018
5
September, 2017
2
July, 2019
1
November, 2020
1
October, 2017
Available data
2760
bam
2520
bigWig
1468
tsv
1302
bed narrowPeak
1130
fastq
790
bigBed narrowPeak
285
bed broadPeak
268
bigBed broadPeak
240
bed bed3+
225
tagAlign
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
788
Homo sapiens
Biosample type
357
tissue
345
cell line
88
primary cell
in vitro differentiated cells
Organ
330
liver
92
kidney
69
brain
61
pancreas
60
heart
55
epithelium
54
blood
54
bodily fluid
50
limb
42
vasculature
39
musculature of body
38
blood vessel
21
connective tissue
18
ureter
11
artery
10
adipose tissue
10
nerve
9
spleen
8
vein
6
eye
Project
790
AMP
Genome assembly (visualization)
748
GRCh38
747
hg19
Lab
790
AMP-T2D consortium
Audit category:
28
inconsistent control
16
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
23
inconsistent control read length
9
inconsistent control run_type
1
inconsistent assembly
assay_title!
HiChIP
biosample_type!
in vitro differentiated cells
organ_slims!
ovary
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
790 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
34
2
kidney
8
13
1
heart
2
18
body of pancreas
15
4
muscle of arm
17
+ See 53 more…
cell line
HepG2
286
GM12878
54
Panc1
3
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
8
2
endothelial cell of umbilical vein
5
2
1
pancreatic beta cell
7
cardiac fibroblast
3
3
pancreatic alpha cell
6
+ See 24 more…
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