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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
total RNA-seq
5
pCHi-C
1
ATAC-seq
Assay category
109
Transcription
1
DNA accessibility
Date released
78
February, 2021
17
August, 2021
9
March, 2020
5
January, 2019
4
May, 2021
October, 2019
1
May, 2020
1
November, 2019
Available data
553
bam
502
bigWig
427
fastq
389
bed narrowPeak
347
bigBed narrowPeak
115
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
115
Homo sapiens
Biosample type
1068
tissue
268
primary cell
129
in vitro differentiated cells
115
cell line
4
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
34
epithelium
34
pancreas
15
liver
8
embryo
2
kidney
1
mammary gland
Project
113
AMP
2
T1D
Genome assembly (visualization)
101
hg19
100
GRCh38
Lab
106
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
36
inconsistent ontology term
assay_title!
HiChIP
month_released!
May, 2022
October, 2019
BIOSAMPLE
ASSAY
115 results
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total RNA-seq
pCHi-C
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
HepG2
14
1
H1-hESC
8
early embryonic cell
2
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