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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
218
ChIP-seq
187
single cell RNA-seq
177
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
Hi-C
9
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
431
Transcription
235
DNA accessibility
218
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
187
histone
187
histone modification
100
broad histone mark
87
narrow histone mark
34
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
29
July, 2019
20
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
602
bigWig
597
bam
409
fastq
289
bed narrowPeak
265
tsv
153
zippedFastqFolder
bigBed narrowPeak
96
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
967
Homo sapiens
Biosample type
1904
tissue
967
primary cell
376
in vitro differentiated cells
197
cell line
10
stem cell
Organ
345
epithelium
324
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
438
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
515
hg19
422
GRCh38
Lab
403
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
30
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
HiChIP
files.file_type!
bigBed narrowPeak
organ_slims!
liver
BIOSAMPLE
ASSAY
967 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
12
29
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
12
16
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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