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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
177
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
552
DNA binding
184
DNA accessibility
Target of assay
435
histone
435
histone modification
236
broad histone mark
199
narrow histone mark
65
transcription factor
52
control
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
96
October, 2019
93
May, 2019
78
November, 2017
75
August, 2017
64
April, 2019
50
May, 2020
45
October, 2018
36
December, 2017
17
November, 2018
14
October, 2017
January, 2019
3
December, 2018
2
July, 2019
Available data
1900
bam
1766
bigWig
1076
tsv
978
bed narrowPeak
555
bigBed narrowPeak
370
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
729
Homo sapiens
Biosample type
736
tissue
351
cell line
198
primary cell
57
in vitro differentiated cells
Organ
183
brain
119
liver
88
heart
87
kidney
84
limb
72
pancreas
62
blood vessel
62
vasculature
53
musculature of body
26
nerve
25
artery
18
adipose tissue
18
connective tissue
18
ureter
7
spleen
3
eye
1
pituitary gland
Project
736
AMP
Genome assembly (visualization)
608
GRCh38
575
hg19
Lab
736
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
HiChIP
month_released!
January, 2019
BIOSAMPLE
ASSAY
736 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
108
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
brain
14
14
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