Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1026
total RNA-seq
563
ChIP-seq
259
ATAC-seq
179
single cell RNA-seq
146
DNase-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
563
DNA binding
436
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
603
histone modification
602
histone
narrow histone mark
287
broad histone mark
183
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
215
August, 2017
166
May, 2020
131
June, 2019
120
July, 2018
113
October, 2019
95
February, 2023
77
May, 2019
70
July, 2019
64
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
33
March, 2020
26
November, 2018
25
May, 2024
23
February, 2020
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1622
bam
1454
bigWig
1069
tsv
674
bed narrowPeak
417
bigBed narrowPeak
347
fastq
166
bed bed3+
158
bed broadPeak
156
txt
144
bigBed broadPeak
118
tagAlign
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2373
Homo sapiens
Biosample type
2380
tissue
963
primary cell
641
cell line
339
in vitro differentiated cells
9
stem cell
Organ
534
connective tissue
476
adipose tissue
473
pancreas
317
liver
289
kidney
275
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2285
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1567
GRCh38
1462
hg19
Lab
2043
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_title!
HiChIP
organ_slims!
musculature of body
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2380 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
34
68
6
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
1
2
3
1
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
+ See 110 more…
See all biosamples
Download