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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
17
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
16
control
1
histone
1
histone modification
1
narrow histone mark
Date released
21
October, 2019
5
July, 2019
3
February, 2020
May, 2019
Available data
107
bam
bed narrowPeak
85
bigWig
78
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
29
Homo sapiens
Biosample type
29
tissue
Organ
731
pancreas
609
connective tissue
478
adipose tissue
372
epithelium
350
liver
196
heart
170
kidney
151
bone element
92
vasculature
90
blood vessel
80
brain
65
artery
35
musculature of body
29
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
5
GRCh38
4
hg19
Lab
29
AMP-T2D consortium
assay_title!
HiChIP
files.file_type!
bed narrowPeak
month_released!
May, 2019
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
5
tibial artery
5
1
gastrocnemius medialis
1
4
islet of Langerhans
1
muscle of leg
1
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