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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
70
DNA binding
7
Transcription
4
3D chromatin structure
2
DNA accessibility
1
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
17
control
Date released
69
October, 2019
7
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
Available data
108
bam
91
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
85
Homo sapiens
Biosample type
85
tissue
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
363
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
85
AMP-T2D consortium
assay_title!
HiChIP
files.file_type!
bigBed broadPeak
organ_slims!
skeleton
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
pCHi-C
tissue
tibial nerve
35
5
1
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
5
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