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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
461
ChIP-seq
41
DNase-seq
25
ATAC-seq
Assay category
461
DNA binding
66
DNA accessibility
Target of assay
329
transcription factor
129
histone modification
128
histone
81
recombinant protein
65
narrow histone mark
63
broad histone mark
56
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
54
October, 2019
51
November, 2018
50
December, 2017
34
June, 2019
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
May, 2019
1
February, 2021
Available data
789
bam
713
bigWig
527
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
527
Homo sapiens
Biosample type
308
cell line
199
tissue
14
in vitro differentiated cells
6
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
skeleton
1
pituitary gland
Project
527
AMP
Genome assembly (visualization)
523
hg19
452
GRCh38
Lab
493
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
assay_title!
HiChIP
organ_slims!
skeleton
BIOSAMPLE
ASSAY
527 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
307
1
tissue
liver
82
2
20
tibial nerve
24
2
1
tibial artery
18
2
1
muscle of leg
6
13
muscle of arm
17
+ See 3 more…
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
See all biosamples
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