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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
3
pCHi-C
Assay category
14
3D chromatin structure
Date released
12
March, 2020
October, 2019
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
Available data
3118
bam
2942
bigWig
1590
bed narrowPeak
1584
tsv
1334
fastq
972
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
264
bed bed3+
153
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
zippedFastqFolder
17
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
17
Homo sapiens
Biosample type
9
tissue
5
in vitro differentiated cells
2
cell line
1
primary cell
Organ
4
pancreas
2
blood vessel
2
epithelium
2
heart
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
17
AMP
Genome assembly (visualization)
15
hg19
Lab
15
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
assay_title!
HiChIP
month_released!
May, 2022
October, 2019
October, 2022
BIOSAMPLE
ASSAY
17 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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