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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
12
total RNA-seq
2
small RNA-seq
1
pCHi-C
Assay category
15
DNA binding
14
Transcription
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
2
control
Date released
15
August, 2017
4
February, 2020
4
July, 2019
4
October, 2019
3
March, 2020
Available data
131
bam
120
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
30
Homo sapiens
Biosample type
28
tissue
2
primary cell
Organ
500
connective tissue
436
pancreas
409
adipose tissue
260
liver
174
heart
163
epithelium
144
brain
74
blood vessel
74
vasculature
64
artery
58
bone element
24
kidney
24
musculature of body
14
embryo
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
23
hg19
10
GRCh38
Lab
30
AMP-T2D consortium
assay_title!
HiChIP
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
total RNA-seq
small RNA-seq
pCHi-C
tissue
skeletal muscle tissue
15
1
1
tibial nerve
5
psoas muscle
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
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primary cell
skeletal muscle satellite cell
1
1
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