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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
46
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
114
DNA binding
67
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
65
histone
65
histone modification
39
broad histone mark
32
control
26
narrow histone mark
20
transcription factor
16
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
203
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
172
bigWig
158
bam
92
bed narrowPeak
67
tsv
60
fastq
47
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
224
Homo sapiens
Biosample type
191
tissue
33
primary cell
Organ
65
heart
59
pancreas
41
connective tissue
35
adipose tissue
18
brain
15
epithelium
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
224
AMP
Genome assembly (visualization)
166
GRCh38
138
hg19
Lab
184
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
HiChIP
BIOSAMPLE
ASSAY
224 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
left cardiac atrium
40
body of pancreas
33
2
2
subcutaneous adipose tissue
12
4
1
endocrine pancreas
16
omental fat pad
11
4
1
+ See 28 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
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