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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
62
total RNA-seq
46
ATAC-seq
38
DNase-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
1
pCHi-C
Assay category
84
DNA accessibility
77
DNA binding
64
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
21
control
17
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
69
October, 2019
66
February, 2021
35
February, 2023
34
June, 2019
12
May, 2019
8
July, 2019
4
February, 2020
2
August, 2021
1
March, 2020
Available data
184
bam
155
bigWig
139
bed narrowPeak
89
bigBed narrowPeak
65
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
231
Homo sapiens
Biosample type
163
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
231
AMP
Genome assembly (visualization)
197
GRCh38
162
hg19
Lab
231
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
HiChIP
organ_slims!
skeleton
BIOSAMPLE
ASSAY
231 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
pCHi-C
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
muscle of leg
7
13
1
muscle of arm
17
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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