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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
93
single cell RNA-seq
62
DNase-seq
23
total RNA-seq
10
ATAC-seq
9
WGBS
7
Hi-C
4
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
170
DNA binding
117
Transcription
72
DNA accessibility
11
DNA methylation
7
3D chromatin structure
Target of assay
130
histone
130
histone modification
77
broad histone mark
53
narrow histone mark
28
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
65
June, 2019
57
April, 2019
55
October, 2019
40
May, 2024
27
July, 2019
23
May, 2019
8
March, 2020
6
February, 2021
4
February, 2020
3
May, 2021
1
February, 2023
Available data
230
bigWig
223
bam
209
bed narrowPeak
153
bigBed narrowPeak
120
tsv
62
bed bed3+
62
bed broadPeak
62
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
381
Homo sapiens
Biosample type
369
tissue
11
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
381
AMP
Genome assembly (visualization)
234
GRCh38
191
hg19
Lab
341
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
7
inconsistent ontology term
assay_title!
HiChIP
organ_slims!
vasculature
BIOSAMPLE
ASSAY
381 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
2
4
1
1
1
left cardiac atrium
40
18
1
tibial nerve
35
2
5
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
+ See 23 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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