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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
34
DNase-seq
7
ATAC-seq
4
Hi-C
3
pCHi-C
2
total RNA-seq
1
WGBS
Assay category
41
DNA accessibility
35
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
29
histone
29
histone modification
18
broad histone mark
11
narrow histone mark
6
control
Date released
32
June, 2019
31
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
2
March, 2020
1
May, 2021
Available data
72
bam
65
bed narrowPeak
60
bigWig
58
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
86
Homo sapiens
Biosample type
86
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
1
T1D
Genome assembly (visualization)
65
GRCh38
65
hg19
Lab
85
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
HiChIP
organ_slims!
nerve
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
WGBS
tissue
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
islet of Langerhans
5
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