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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
Assay category
31
DNA binding
Target of assay
694
histone modification
693
histone
411
transcription factor
355
narrow histone mark
338
broad histone mark
94
RNA binding protein
88
recombinant protein
31
chromatin remodeller
7
control
5
other context
5
other post-translational modification
Date released
13
November, 2017
7
November, 2018
6
January, 2019
2
December, 2017
2
December, 2018
1
August, 2017
Available data
31
bam
31
bed narrowPeak
31
bigBed narrowPeak
31
bigWig
31
fastq
5
bed broadPeak
5
bigBed broadPeak
Organism
31
Homo sapiens
Biosample type
28
cell line
in vitro differentiated cells
2
tissue
1
primary cell
Organ
20
liver
10
blood
10
bodily fluid
Project
31
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
10
inconsistent control read length
6
inconsistent control run_type
assay_title!
MPRA
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
cell line
HepG2
18
GM12878
10
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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