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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
15
Hi-C
1
pCHi-C
Assay category
64
DNA accessibility
15
3D chromatin structure
Date released
66
August, 2021
8
March, 2020
3
October, 2022
1
August, 2018
1
November, 2019
1
October, 2019
Available data
3180
bam
2977
bigWig
1754
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
75
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
80
Homo sapiens
Biosample type
74
tissue
4
primary cell
1
cell line
1
in vitro differentiated cells
Organ
64
kidney
6
pancreas
4
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
77
AMP
3
HPAP
Genome assembly (visualization)
64
GRCh38
14
hg19
Lab
64
Katalin Susztak, Upenn
11
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
3
audit script error
assay_title!
MPRA
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
Hi-C
pCHi-C
tissue
kidney
64
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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