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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
34
DNase-seq
32
ChIP-seq
6
Hi-C
5
ATAC-seq
5
small RNA-seq
3
pCHi-C
1
RNA microarray
1
RRBS
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
40
DNA accessibility
32
DNA binding
6
3D chromatin structure
2
DNA methylation
Target of assay
20
control
7
histone
7
histone modification
5
RNA binding protein
5
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
386
February, 2021
August, 2017
35
June, 2019
23
October, 2018
22
July, 2019
7
May, 2019
6
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
472
bam
455
bigWig
410
tsv
48
bed narrowPeak
47
bigBed narrowPeak
35
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
26
fastq
3
bedpe bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
txt
Organism
493
Homo sapiens
Biosample type
485
tissue
8
primary cell
1
in vitro differentiated cells
Organ
736
liver
677
pancreas
540
connective tissue
433
adipose tissue
404
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
75
bone element
69
blood
69
bodily fluid
61
eye
61
musculature of body
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
494
AMP
Genome assembly (visualization)
460
hg19
452
GRCh38
Lab
494
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
assay_title!
MPRA
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
494 results
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total RNA-seq
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
RRBS
WGBS
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
12
1
1
muscle of leg
12
7
1
omental fat pad
5
2
11
1
1
muscle of arm
17
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primary cell
skeletal muscle cell
1
2
1
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
in vitro differentiated cells
white fat cell
1
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