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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
46
total RNA-seq
13
ChIP-seq
2
Hi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
65
DNA accessibility
47
Transcription
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
670
February, 2021
395
August, 2017
385
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
Available data
83
bam
75
bed narrowPeak
51
bigWig
24
fastq
20
tsv
7
txt
2
bedpe bed3+
2
hic
1
bed bed3+
Organism
127
Homo sapiens
Biosample type
106
tissue
16
cell line
5
in vitro differentiated cells
Organ
79
pancreas
40
liver
16
epithelium
2
musculature of body
1
adipose tissue
1
connective tissue
Project
134
HPAP
127
AMP
Genome assembly (visualization)
98
hg19
57
GRCh38
Lab
63
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
1
audit script error
assay_title!
MPRA
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
snATAC-seq
tissue
islet of Langerhans
37
25
1
liver
20
20
skeletal muscle tissue
1
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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