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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
91
ATAC-seq
89
total RNA-seq
31
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
280
DNA accessibility
90
Transcription
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
3
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
273
bed narrowPeak
218
bam
210
bigBed narrowPeak
210
bigWig
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
76
fastq
16
tsv
5
bed bed3
4
txt
Organism
406
Homo sapiens
Biosample type
258
tissue
143
primary cell
in vitro differentiated cells
6
cell line
Organ
81
kidney
72
epithelium
71
heart
60
pancreas
43
musculature of body
42
vasculature
40
blood vessel
38
eye
37
artery
32
limb
31
brain
19
connective tissue
18
ureter
8
bone element
8
skeleton
2
adipose tissue
2
liver
Project
308
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
245
GRCh38
220
hg19
Lab
308
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
Audit category:
32
inconsistent ontology term
assay_title!
MPRA
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
BIOSAMPLE
ASSAY
407 results
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Clear Filters
DNase-seq
ATAC-seq
total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
2
35
retina
3
15
2
heart
18
1
islet of Langerhans
11
5
2
muscle of arm
17
+ See 41 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 24 more…
cell line
EndoC_BH1
3
2
1
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