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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
12
ChIP-seq
8
ATAC-seq
6
DNase-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
15
DNA accessibility
12
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
6
control
6
transcription factor
2
RNA binding protein
Date released
66
February, 2021
6
October, 2019
5
July, 2019
4
June, 2019
4
November, 2017
1
March, 2020
Available data
81
bam
71
bigWig
54
tsv
21
bed narrowPeak
9
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
4
fastq
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
86
Homo sapiens
Biosample type
tissue
66
cell line
20
primary cell
Organ
416
epithelium
397
liver
363
pancreas
92
connective tissue
86
vasculature
81
blood vessel
78
heart
68
artery
68
blood
68
bodily fluid
45
kidney
25
embryo
18
brain
7
vein
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
86
AMP
Genome assembly (visualization)
81
hg19
74
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
MPRA
biosample_type!
tissue
organ_slims!
musculature of body
target.investigated_as!
histone
BIOSAMPLE
ASSAY
86 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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