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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
124
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
132
Transcription
124
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
broad histone mark
47
narrow histone mark
46
transcription factor
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
120
May, 2021
48
August, 2017
35
August, 2021
26
February, 2021
21
February, 2018
20
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
230
bam
205
bigWig
125
tsv
87
fastq
85
bed narrowPeak
26
tagAlign
19
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
313
Homo sapiens
Biosample type
2474
tissue
966
primary cell
634
cell line
313
in vitro differentiated cells
9
stem cell
Organ
77
connective tissue
embryo
17
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
313
AMP
Genome assembly (visualization)
244
hg19
211
GRCh38
3
hg18
Lab
269
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
MPRA
organ_slims!
embryo
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
313 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
5
47
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
29
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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