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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
93
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
93
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
broad histone mark
55
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
106
May, 2021
35
August, 2021
31
February, 2018
26
August, 2017
26
February, 2021
21
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
217
bam
185
bigWig
131
tsv
77
fastq
63
bed narrowPeak
22
tagAlign
15
bed bed3+
8
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
289
Homo sapiens
Biosample type
2380
tissue
956
primary cell
289
in vitro differentiated cells
281
cell line
9
stem cell
Organ
55
connective tissue
22
embryo
14
epithelium
6
liver
2
pancreas
1
adipose tissue
1
heart
Project
289
AMP
Genome assembly (visualization)
224
hg19
191
GRCh38
4
hg18
Lab
257
AMP-T2D consortium
25
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_title!
MPRA
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
289 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
25
8
1
1
embryonic stem cell
7
17
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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