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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
205
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
65
control
61
histone modification
60
histone
35
broad histone mark
25
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
168
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
9
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
362
Homo sapiens
Biosample type
415
cell line
397
primary cell
362
tissue
141
in vitro differentiated cells
4
stem cell
Organ
206
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
4
brain
2
musculature of body
Project
362
AMP
Genome assembly (visualization)
282
hg19
268
GRCh38
Lab
336
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
MPRA
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
362 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
omental fat pad
11
1
1
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