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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
165
DNase-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
1
FAIRE-seq
Assay category
174
DNA binding
168
DNA accessibility
89
Transcription
14
DNA methylation
Target of assay
124
histone modification
123
histone
73
broad histone mark
50
narrow histone mark
29
control
23
transcription factor
RNA binding protein
Date released
545
February, 2021
282
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
77
July, 2019
76
April, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
339
bigWig
331
bam
228
bed narrowPeak
189
bed broadPeak
187
bed bed3+
185
bigBed narrowPeak
173
fastq
163
bigBed broadPeak
89
tsv
59
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
Organism
438
Homo sapiens
Biosample type
445
tissue
108
primary cell
64
in vitro differentiated cells
Organ
149
pancreas
68
kidney
58
adipose tissue
58
connective tissue
58
musculature of body
54
liver
32
limb
27
heart
25
brain
18
ureter
3
blood vessel
3
eye
3
vasculature
2
artery
Project
445
AMP
Genome assembly (visualization)
325
hg19
319
GRCh38
Lab
445
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
MPRA
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
445 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
40
1
89
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
heart
18
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