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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
472
ChIP-seq
239
ATAC-seq
179
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1053
Transcription
472
DNA binding
445
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
558
histone
558
histone modification
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
229
August, 2021
193
August, 2017
163
June, 2019
120
July, 2018
109
October, 2019
95
February, 2023
82
May, 2019
69
July, 2019
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
40
May, 2021
40
November, 2019
35
March, 2020
26
May, 2022
25
May, 2024
24
February, 2020
21
October, 2017
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1412
bam
1275
bigWig
922
tsv
641
bed narrowPeak
407
bigBed narrowPeak
273
fastq
195
bed broadPeak
193
bed bed3+
173
bigBed broadPeak
157
txt
91
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
Organism
2129
Homo sapiens
Biosample type
2136
tissue
961
primary cell
329
in vitro differentiated cells
250
cell line
9
stem cell
Organ
534
connective tissue
476
adipose tissue
473
pancreas
liver
289
kidney
275
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2041
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1398
GRCh38
1284
hg19
Lab
1839
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_title!
MPRA
organ_slims!
liver
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2136 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
34
68
6
1
7
4
3
1
1
4
adipose tissue
382
1
3
1
3
kidney
49
17
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
26
2
18
3
1
4
1
1
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