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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
3
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
37
DNA binding
5
DNA accessibility
2
3D chromatin structure
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
21
October, 2019
7
December, 2018
7
January, 2019
7
November, 2018
2
March, 2020
1
October, 2017
Available data
44
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
24
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
45
Homo sapiens
Biosample type
23
tissue
22
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
31
hg19
26
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
MPRA
files.file_type!
bed bedMethyl
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
pCHi-C
tissue
spleen
20
1
1
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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