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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
90
total RNA-seq
11
ATAC-seq
9
WGBS
6
RRBS
3
single cell RNA-seq
1
DNase-seq
Assay category
264
DNA binding
93
Transcription
15
DNA methylation
12
DNA accessibility
Target of assay
169
histone modification
168
histone
91
broad histone mark
76
narrow histone mark
50
control
45
transcription factor
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
383
Homo sapiens
Biosample type
277
tissue
67
in vitro differentiated cells
40
primary cell
Organ
171
pancreas
123
connective tissue
56
adipose tissue
48
liver
26
epithelium
26
musculature of body
14
kidney
Project
384
AMP
Genome assembly (visualization)
235
hg19
223
GRCh38
Lab
370
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
39
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
MPRA
files.file_type!
bigBed narrowPeak
month_released!
December, 2017
BIOSAMPLE
ASSAY
384 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
single cell RNA-seq
DNase-seq
tissue
islet of Langerhans
42
89
liver
43
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
kidney
11
3
+ See 4 more…
in vitro differentiated cells
adipocyte
67
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
skeletal muscle myoblast
1
1
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