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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
6
WGBS
2
ATAC-seq
1
DNase-seq
Assay category
95
DNA binding
6
DNA methylation
3
DNA accessibility
Target of assay
50
histone
50
histone modification
34
transcription factor
28
broad histone mark
21
narrow histone mark
11
control
4
RNA binding protein
2
chromatin remodeller
Date released
455
February, 2021
103
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
14
February, 2023
6
November, 2020
5
August, 2021
4
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
72
bam
72
fastq
65
bigWig
47
bed narrowPeak
tagAlign
11
bed bed3+
3
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
104
Homo sapiens
Biosample type
54
in vitro differentiated cells
50
tissue
Organ
227
pancreas
104
connective tissue
50
adipose tissue
45
epithelium
34
liver
11
musculature of body
Project
104
AMP
Genome assembly (visualization)
66
GRCh38
64
hg19
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
MPRA
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
1
tissue
subcutaneous abdominal adipose tissue
28
3
white adipose tissue
12
adipose tissue
2
3
adipose tissue(adipose white tissue)
1
subcutaneous adipose tissue
1
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