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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
November, 2018
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
260
Homo sapiens
Biosample type
242
tissue
18
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
thymus
Project
260
AMP
Genome assembly (visualization)
205
GRCh38
152
hg19
Lab
260
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
MPRA
files.file_type!
tsv
lab.title!
Anna Gloyn, Oxford
organ_slims!
thymus
BIOSAMPLE
ASSAY
260 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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