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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
6
ATAC-seq
6
WGBS
4
DNase-seq
2
Hi-C
1
FAIRE-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
90
DNA binding
11
DNA accessibility
6
DNA methylation
2
3D chromatin structure
1
Transcription
Target of assay
47
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
22
October, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
462
bam
440
bigWig
tsv
44
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tar
Organism
111
Homo sapiens
Biosample type
89
tissue
22
primary cell
1
in vitro differentiated cells
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
112
AMP
Genome assembly (visualization)
45
hg19
38
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
MPRA
files.file_type!
tsv
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
FAIRE-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
in vitro differentiated cells
white fat cell
1
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