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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
ChIP-seq
1
ATAC-seq
Assay category
96
Transcription
84
DNA binding
1
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
May, 2022
1
March, 2019
Available data
290
bigWig
236
bed narrowPeak
181
bam
171
fastq
112
tsv
84
tagAlign
64
xls
60
txt
19
zippedFastqFolder
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
181
Homo sapiens
Biosample type
180
primary cell
1
tissue
Organ
1
pancreas
Project
180
T1D
1
AMP
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
AMP-T2D consortium
180
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
assay_title!
MPRA
lab.title!
AMP-T2D consortium
month_released!
August, 2022
May, 2022
BIOSAMPLE
ASSAY
181 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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tissue
islet of Langerhans
1
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