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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
MPRA
Assay category
66
Transcription
3
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
May, 2022
Available data
2926
bam
2724
bigWig
1766
bed narrowPeak
1290
fastq
1199
tsv
1032
bigBed narrowPeak
390
tagAlign
319
bed broadPeak
283
bigBed broadPeak
266
bed bed3+
153
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
hic
22
bedpe bed3+
19
zippedFastqFolder
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
153
Homo sapiens
Biosample type
150
tissue
3
in vitro differentiated cells
Organ
88
bone element
62
kidney
4
skeleton
Project
153
AMP
Genome assembly (visualization)
3
hg19
Lab
93
AMP-T2D consortium
57
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
5
audit script error
assay_title!
MPRA
month_released!
August, 2022
May, 2022
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
153 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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