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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
total RNA-seq
14
ATAC-seq
14
small RNA-seq
13
RRBS
12
WGBS
6
ChIP-seq
6
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
25
DNA methylation
15
DNA accessibility
6
3D chromatin structure
6
DNA binding
Target of assay
6
control
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
81
bam
74
bigWig
54
tsv
21
bed bedMethyl
21
bigBed bedMethyl
12
fastq
11
bed narrowPeak
6
bigBed narrowPeak
3
bed bed3+
1
bed broadPeak
1
bedpe
1
hdf5
1
hic
Organism
106
Homo sapiens
Biosample type
77
tissue
29
primary cell
Organ
25
heart
22
pancreas
brain
18
connective tissue
18
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
106
AMP
Genome assembly (visualization)
84
hg19
76
GRCh38
Lab
101
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
MPRA
organ_slims!
brain
BIOSAMPLE
ASSAY
106 results
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Clear Filters
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
ChIP-seq
Hi-C
FAIRE-seq
tissue
islet of Langerhans
4
1
6
1
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 19 more…
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
pancreatic beta cell
2
+ See 17 more…
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