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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
total RNA-seq
41
ChIP-seq
18
ATAC-seq
10
snATAC-seq
9
single cell RNA-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
414
Transcription
41
DNA binding
30
DNA accessibility
6
DNA methylation
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
394
February, 2021
25
August, 2017
23
October, 2018
19
April, 2020
12
July, 2019
9
February, 2023
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
449
bam
423
bigWig
402
tsv
43
fastq
19
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
4
bed bed3
4
txt
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
493
Homo sapiens
Biosample type
492
tissue
2
primary cell
1
in vitro differentiated cells
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
476
AMP
19
LungMap
Genome assembly (visualization)
436
hg19
431
GRCh38
Lab
476
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
MPRA
target.investigated_as!
histone
BIOSAMPLE
ASSAY
495 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
lung
10
9
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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