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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
93
single cell RNA-seq
40
ATAC-seq
27
DNase-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
124
DNA binding
109
Transcription
67
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
96
histone
96
histone modification
57
broad histone mark
39
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
10
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
174
bed narrowPeak
158
bigWig
133
bam
111
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
tagAlign
Organism
315
Homo sapiens
Biosample type
315
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
501
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
315
AMP
Genome assembly (visualization)
192
GRCh38
114
hg19
Lab
275
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
MeRIP-seq
assay_title!!
MeRIP-seq
BIOSAMPLE
ASSAY
315 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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