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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
Assay category
58
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
19
November, 2018
4
December, 2017
1
August, 2021
Available data
57
bam
57
fastq
56
bed narrowPeak
56
bigWig
55
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
58
Homo sapiens
Biosample type
54
cell line
2
in vitro differentiated cells
2
tissue
Organ
58
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
58
AMP
Genome assembly (visualization)
55
hg19
51
GRCh38
Lab
57
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
assay_title!
MeRIP-seq
assay_title!!
MeRIP-seq
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
cell line
HepG2
54
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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