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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
39
ChIP-seq
28
DNase-seq
17
pCHi-C
10
Hi-C
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
432
Transcription
285
DNA accessibility
48
DNA methylation
39
DNA binding
10
3D chromatin structure
Target of assay
235
histone
histone modification
122
broad histone mark
113
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
30
June, 2019
20
August, 2017
18
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
396
bam
375
bigWig
335
fastq
266
tsv
153
zippedFastqFolder
75
bed narrowPeak
58
bigBed narrowPeak
31
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
831
Homo sapiens
Biosample type
1917
tissue
831
primary cell
552
cell line
281
in vitro differentiated cells
8
stem cell
Organ
334
epithelium
288
pancreas
30
connective tissue
23
kidney
19
vasculature
17
brain
15
blood vessel
heart
10
liver
8
blood
8
bodily fluid
7
vein
5
musculature of body
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
386
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
381
hg19
330
GRCh38
Lab
381
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
32
inconsistent ontology term
31
audit script error
assay_title!
MeRIP-seq
RRBS
organ_slims!
heart
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
831 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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