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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
46
ATAC-seq
25
ChIP-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
66
Transcription
51
DNA accessibility
25
DNA binding
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
35
February, 2023
14
May, 2019
8
July, 2019
8
October, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
100
bam
73
bigWig
67
tsv
58
bed narrowPeak
8
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
146
Homo sapiens
Biosample type
79
tissue
66
cell line
1
primary cell
Organ
785
pancreas
688
liver
606
connective tissue
459
adipose tissue
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
146
AMP
Genome assembly (visualization)
116
GRCh38
81
hg19
Lab
146
AMP-T2D consortium
assay_title!
MeRIP-seq
shRNA RNA-seq
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
146 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
1
36
3
2
aorta
1
2
4
2
1
1
tibial artery
1
1
5
2
thoracic aorta
2
1
5
ascending aorta
2
4
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the coronary artery
1
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