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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
39
ChIP-seq
28
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
285
DNA accessibility
245
Transcription
57
DNA methylation
39
DNA binding
10
3D chromatin structure
Target of assay
235
histone
histone modification
122
broad histone mark
113
narrow histone mark
30
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
101
May, 2022
88
February, 2023
88
May, 2021
40
September, 2018
36
February, 2021
30
June, 2019
23
July, 2019
21
August, 2017
19
September, 2020
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
Available data
296
bam
275
bigWig
208
fastq
166
tsv
101
zippedFastqFolder
75
bed narrowPeak
58
bigBed narrowPeak
31
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
tagAlign
1
bed bed3
1
tar
Organism
653
Homo sapiens
Biosample type
1840
tissue
653
primary cell
552
cell line
279
in vitro differentiated cells
8
stem cell
Organ
270
epithelium
214
pancreas
27
connective tissue
26
kidney
20
vasculature
15
blood vessel
15
brain
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
293
AMP
239
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
290
hg19
230
GRCh38
Lab
288
AMP-T2D consortium
239
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
assay_title!
MeRIP-seq
single cell RNA-seq
organ_slims!
heart
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
653 results
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total RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
31
6
1
monocyte
54
15
1
1
pancreatic beta cell
21
23
16
6
1
Langerhans cell
48
exocrine cell
39
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