Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
217
ATAC-seq
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
292
DNA binding
246
DNA accessibility
136
Transcription
22
DNA methylation
16
3D chromatin structure
Target of assay
185
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
123
August, 2021
106
August, 2017
95
February, 2021
94
February, 2023
82
October, 2019
45
May, 2022
29
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
November, 2019
15
April, 2019
14
July, 2019
12
December, 2017
12
May, 2023
10
April, 2020
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
3
November, 2018
2
December, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1901
bam
bigWig
984
bed narrowPeak
967
tsv
561
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
824
Homo sapiens
Biosample type
827
tissue
388
primary cell
134
cell line
133
in vitro differentiated cells
7
stem cell
Organ
144
kidney
128
pancreas
100
bone element
95
liver
66
connective tissue
65
adipose tissue
63
brain
63
heart
57
blood vessel
57
vasculature
53
eye
44
artery
31
limb
24
musculature of body
16
skeleton
15
epithelium
12
nerve
11
lung
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
788
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
147
GRCh38
108
hg19
Lab
607
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
assay_title!
MeRIP-seq
single cell RNA-seq
files.file_type!
bigWig
csv
BIOSAMPLE
ASSAY
827 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
snDrop-seq
DNase-seq
tissue
islet of Langerhans
42
65
32
7
4
3
1
kidney
7
75
49
6
1
1
liver
63
20
1
1
1
3
bone element
84
coronary artery
2
35
1
+ See 84 more…
See all biosamples
Download