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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
321
ChIP-seq
132
total RNA-seq
103
ATAC-seq
87
RNA microarray
81
single cell RNA-seq
27
snATAC-seq
22
pCHi-C
19
WGBS
15
DNase-seq
5
Hi-C
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
321
DNA binding
213
Transcription
145
DNA accessibility
21
DNA methylation
5
3D chromatin structure
Target of assay
166
control
154
histone
154
histone modification
84
broad histone mark
70
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
136
August, 2021
104
August, 2017
93
February, 2021
79
October, 2019
76
November, 2017
47
September, 2023
29
October, 2018
27
May, 2022
26
February, 2023
23
May, 2020
22
February, 2020
19
April, 2020
19
March, 2020
16
May, 2019
14
June, 2019
14
May, 2023
12
December, 2017
9
July, 2019
9
November, 2018
9
October, 2017
8
January, 2021
5
April, 2019
4
December, 2018
4
July, 2018
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
235
bam
156
txt
132
tagAlign
130
bed narrowPeak
82
fastq
77
bigWig
66
bigBed narrowPeak
64
xls
60
tsv
15
bed broadPeak
14
bed bed3+
14
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
csv
1
bedpe bed3+
Organism
814
Homo sapiens
Biosample type
817
tissue
457
primary cell
123
cell line
96
in vitro differentiated cells
7
stem cell
Organ
207
kidney
heart
121
brain
93
liver
88
bone element
88
pancreas
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
722
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1643
GRCh38
hg19
Lab
552
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
missing controlled_by
assay_title!
MeRIP-seq
assembly!
hg19
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
heart
BIOSAMPLE
ASSAY
817 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
DNase-seq
Hi-C
snDrop-seq
RRBS
tissue
kidney
7
49
75
64
6
islet of Langerhans
40
32
26
7
4
1
liver
62
20
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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