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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
48
ChIP-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
89
Transcription
48
DNA binding
7
DNA accessibility
2
DNA methylation
Target of assay
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
207
November, 2017
191
June, 2019
190
May, 2021
188
May, 2020
164
July, 2018
146
August, 2017
89
August, 2021
79
July, 2019
79
November, 2018
49
April, 2018
47
December, 2017
47
November, 2019
40
September, 2018
38
October, 2019
35
February, 2023
30
December, 2018
19
January, 2019
17
October, 2018
15
February, 2018
13
March, 2020
12
May, 2023
8
October, 2017
7
August, 2020
7
September, 2017
6
November, 2020
5
April, 2019
5
December, 2019
5
May, 2019
5
May, 2024
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
146
bam
146
fastq
144
bigWig
89
tsv
30
bed narrowPeak
21
bed bed3+
8
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
146
Homo sapiens
Biosample type
118
tissue
24
in vitro differentiated cells
4
primary cell
Organ
100
pancreas
39
connective tissue
15
adipose tissue
6
liver
3
epithelium
Project
146
AMP
Genome assembly (visualization)
153
hg19
146
GRCh38
Lab
146
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
MeRIP-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
146 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
89
7
1
white adipose tissue
12
liver
5
adipose tissue
2
right lobe of liver
1
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in vitro differentiated cells
adipocyte
23
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
skeletal muscle myoblast
1
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