Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
33
ChIP-seq
2
ATAC-seq
Assay category
178
DNA accessibility
33
DNA binding
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
Date released
163
June, 2019
26
August, 2017
9
November, 2018
6
November, 2017
4
October, 2019
2
October, 2017
1
March, 2019
Available data
1882
bam
1747
bigWig
1075
tsv
980
bed narrowPeak
558
bigBed narrowPeak
351
fastq
234
tagAlign
211
bed broadPeak
191
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
205
Homo sapiens
Biosample type
211
tissue
59
cell line
49
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
limb
34
brain
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
211
AMP
Genome assembly (visualization)
194
hg19
189
GRCh38
Lab
209
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
MeRIP-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
stomach
BIOSAMPLE
ASSAY
211 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 45 more…
See all biosamples
Download