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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
910
total RNA-seq
17
pCHi-C
17
single cell RNA-seq
15
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
942
Transcription
1
DNA accessibility
Date released
452
February, 2021
143
May, 2020
116
July, 2018
89
August, 2017
40
July, 2019
36
May, 2021
23
March, 2020
22
February, 2020
19
November, 2019
7
August, 2021
6
April, 2018
6
October, 2019
4
February, 2023
2
December, 2019
Available data
1750
bam
1590
bigWig
965
tsv
807
bed narrowPeak
470
bigBed narrowPeak
351
fastq
234
tagAlign
184
bed broadPeak
164
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
965
Homo sapiens
Biosample type
965
tissue
266
primary cell
130
in vitro differentiated cells
67
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
275
pancreas
154
liver
heart
58
bone element
23
brain
14
blood vessel
14
vasculature
12
kidney
7
limb
7
musculature of body
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
965
AMP
Genome assembly (visualization)
905
hg19
904
GRCh38
Lab
964
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
assay_title!
MeRIP-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
heart
BIOSAMPLE
ASSAY
965 results
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total RNA-seq
pCHi-C
single cell RNA-seq
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
261
6
1
liver
147
1
1
bone tissue
58
subcutaneous adipose tissue
7
1
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