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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
1
Hi-C
Assay category
51
DNA binding
1
3D chromatin structure
Target of assay
26
histone
26
histone modification
25
transcription factor
16
broad histone mark
13
chromatin remodeller
10
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
14
August, 2017
8
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
1
October, 2019
Available data
52
bigWig
51
bam
51
fastq
49
bed narrowPeak
33
bigBed narrowPeak
15
bed broadPeak
14
bigBed broadPeak
13
tagAlign
9
bed bed3+
1
hdf5
Organism
51
Homo sapiens
Biosample type
27
cell line
16
in vitro differentiated cells
7
tissue
2
primary cell
stem cell
Organ
27
liver
11
pancreas
6
connective tissue
epithelium
3
embryo
Project
52
AMP
Genome assembly (visualization)
52
hg19
48
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
49
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
assay_title!
MeRIP-seq
biosample_type!
stem cell
organ_slims!
epithelium
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
Hi-C
cell line
HepG2
26
Panc1
1
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
tissue
pancreas
5
body of pancreas
1
liver
1
primary cell
skeletal muscle myoblast
2
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